STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scfd2Sec1 family domain containing 2. (666 aa)    
Predicted Functional Partners:
LOC106908950
Zw10 kinetochore protein.
    
 
 0.813
rint1
RAD50 interactor 1.
   
 
 0.792
stx18
Syntaxin 18.
    
 
 0.779
ENSPMEP00000026530
Uncharacterized protein.
    
 
 0.702
nbas
Neuroblastoma amplified sequence.
    
 
 0.702
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.664
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
   
   0.657
napg
N-ethylmaleimide-sensitive factor attachment protein, gamma b.
    
   0.578
LOC106921767
BCL2 interacting protein 1a.
    
 
 0.556
LOC106907595
BCL2 interacting protein 1b.
    
 
 0.556
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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