STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106931075Tetraspanin. (210 aa)    
Predicted Functional Partners:
ptgfrn
Uncharacterized protein.
    
 
 0.627
ptprc
Uncharacterized protein.
    
 0.595
LOC106931020
Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.
   
  
 0.569
mst1r
Macrophage stimulating 1 receptor b.
    
 0.569
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.569
LOC106916334
Macrophage stimulating 1 receptor a.
    
 0.569
pkm
Pyruvate kinase; Belongs to the pyruvate kinase family.
      
 0.565
ush1c
Usher syndrome 1C.
   
 0.548
itga4
Integrin alpha 4; Belongs to the integrin alpha chain family.
    
 0.538
itga9
Integrin, alpha 9; Belongs to the integrin alpha chain family.
    
 0.538
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.