STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106932422Collagen, type I, alpha 1b. (1305 aa)    
Predicted Functional Partners:
itgb5
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
itgb3
Integrin beta; Belongs to the integrin beta chain family.
    
 0.912
LOC106927715
Integrin beta; Belongs to the integrin beta chain family.
    
 0.911
LOC106930134
Integrin beta; Belongs to the integrin beta chain family.
    
 0.910
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.910
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.909
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
  0.907
itgb4
Integrin beta.
    
 0.907
LOC106920056
Integrin, alpha 3b; Belongs to the integrin alpha chain family.
    
 0.905
LOC106925041
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.905
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.