STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106933689Uncharacterized protein. (1456 aa)    
Predicted Functional Partners:
LOC106919996
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.860
LOC106915805
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.756
LOC106919679
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.736
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.734
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.700
LOC106930609
Thrombospondin 1a.
   
 
 0.682
thbs1
Thrombospondin 1b.
   
 
 0.680
fam20c
FAM20C golgi associated secretory pathway kinase a.
    
  0.643
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
 0.626
LOC106920465
Fam20C domain-containing protein.
    
  0.606
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.