STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921674Si:ch211-168d23.3. (768 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.873
gle1
GLE1 RNA export mediator.
    
 0.622
ranbp2
RAN binding protein 2.
   
 
  0.617
fras1
Fraser extracellular matrix complex subunit 1.
    
  0.617
ENSPMEP00000033083
Uncharacterized protein.
    
  0.617
rps21
Ribosomal protein S21.
   
  0.606
ENSPMEP00000030266
Uncharacterized protein.
    
  0.588
LOC106907379
Uncharacterized protein.
    
 0.582
rps28
Ribosomal protein S28.
   
   0.570
rps15
Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.565
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.