emp2 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

emp2

Epithelial membrane protein 2. (165 aa)

Predicted Functional Partners:

itsn2

0.541

ENSPMEP00000009475

0.541

ENSPMEP00000009513

0.541

ENSPMEP00000009540

0.541

ENSPMEP00000027183

0.541

dnajc8

0.478

garem1

0.461

LOC106914451

0.450

cplx4

0.414

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPMEP00000009475	ENSPMEP00000009513	ENSPMEP00000009475	ENSPMEP00000009513	Uncharacterized protein.	SH3 domain-containing protein.	0.993
ENSPMEP00000009475	ENSPMEP00000009540	ENSPMEP00000009475	ENSPMEP00000009540	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPMEP00000009475	ENSPMEP00000027183	ENSPMEP00000009475	ENSPMEP00000027183	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPMEP00000009475	emp2	ENSPMEP00000009475	ENSPMEP00000025712	Uncharacterized protein.	Epithelial membrane protein 2.	0.541
ENSPMEP00000009475	itsn2	ENSPMEP00000009475	ENSPMEP00000009069	Uncharacterized protein.	Intersectin 2a.	0.993
ENSPMEP00000009513	ENSPMEP00000009475	ENSPMEP00000009513	ENSPMEP00000009475	SH3 domain-containing protein.	Uncharacterized protein.	0.993
ENSPMEP00000009513	ENSPMEP00000009540	ENSPMEP00000009513	ENSPMEP00000009540	SH3 domain-containing protein.	Uncharacterized protein.	0.993
ENSPMEP00000009513	ENSPMEP00000027183	ENSPMEP00000009513	ENSPMEP00000027183	SH3 domain-containing protein.	Uncharacterized protein.	0.993
ENSPMEP00000009513	emp2	ENSPMEP00000009513	ENSPMEP00000025712	SH3 domain-containing protein.	Epithelial membrane protein 2.	0.541
ENSPMEP00000009513	itsn2	ENSPMEP00000009513	ENSPMEP00000009069	SH3 domain-containing protein.	Intersectin 2a.	0.993
ENSPMEP00000009540	ENSPMEP00000009475	ENSPMEP00000009540	ENSPMEP00000009475	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPMEP00000009540	ENSPMEP00000009513	ENSPMEP00000009540	ENSPMEP00000009513	Uncharacterized protein.	SH3 domain-containing protein.	0.993
ENSPMEP00000009540	ENSPMEP00000027183	ENSPMEP00000009540	ENSPMEP00000027183	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSPMEP00000009540	emp2	ENSPMEP00000009540	ENSPMEP00000025712	Uncharacterized protein.	Epithelial membrane protein 2.	0.541
ENSPMEP00000009540	itsn2	ENSPMEP00000009540	ENSPMEP00000009069	Uncharacterized protein.	Intersectin 2a.	0.993
ENSPMEP00000027183	ENSPMEP00000009475	ENSPMEP00000027183	ENSPMEP00000009475	Uncharacterized protein.	Uncharacterized protein.	0.994
ENSPMEP00000027183	ENSPMEP00000009513	ENSPMEP00000027183	ENSPMEP00000009513	Uncharacterized protein.	SH3 domain-containing protein.	0.993
ENSPMEP00000027183	ENSPMEP00000009540	ENSPMEP00000027183	ENSPMEP00000009540	Uncharacterized protein.	Uncharacterized protein.	0.998
ENSPMEP00000027183	emp2	ENSPMEP00000027183	ENSPMEP00000025712	Uncharacterized protein.	Epithelial membrane protein 2.	0.541
ENSPMEP00000027183	itsn2	ENSPMEP00000027183	ENSPMEP00000009069	Uncharacterized protein.	Intersectin 2a.	0.993