STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smpdl3aAcid sphingomyelinase-like phosphodiesterase. (440 aa)    
Predicted Functional Partners:
ttc9c
Tetratricopeptide repeat domain 9C.
      
 0.563
sqor
Sulfide quinone oxidoreductase.
      
 0.555
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
      
 0.519
LOC106909552
MACPF domain-containing protein.
      
 0.503
brinp1
Bone morphogenetic protein/retinoic acid inducible neural-specific 1.
      
 0.503
LOC106905312
ML domain-containing protein.
   
 
  0.497
NPC2
NPC intracellular cholesterol transporter 2.
   
 
  0.497
btbd10
BTB (POZ) domain containing 10a.
      
 0.495
LOC106923859
BTB (POZ) domain containing 10b.
      
 0.495
arhgap1
Uncharacterized protein.
      
 0.493
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.