LOC106907888 protein (Poecilia mexicana) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106907888

Zgc:92873. (336 aa)

Predicted Functional Partners:

LRRC49

0.823

tpgs2

0.818

ttll1

0.795

nicn1

0.773

ttl

0.574

LOC106928583

0.563

eif3f

0.563

mfsd5

0.511

LOC106911698

0.499

tpgs1

0.451

Your Current Organism:

Poecilia mexicana

NCBI taxonomy Id: 48701
Other names: shortfin molly

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106907888	LOC106911698	ENSPMEP00000028816	ENSPMEP00000019154	Zgc:92873.	Uncharacterized protein.	0.499
LOC106907888	LOC106928583	ENSPMEP00000028816	ENSPMEP00000006074	Zgc:92873.	Melanocyte proliferating gene 1.	0.563
LOC106907888	LRRC49	ENSPMEP00000028816	ENSPMEP00000009251	Zgc:92873.	Leucine rich repeat containing 49.	0.823
LOC106907888	eif3f	ENSPMEP00000028816	ENSPMEP00000017057	Zgc:92873.	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.563
LOC106907888	mfsd5	ENSPMEP00000028816	ENSPMEP00000022511	Zgc:92873.	Major facilitator superfamily domain containing 5.	0.511
LOC106907888	nicn1	ENSPMEP00000028816	ENSPMEP00000018246	Zgc:92873.	Nicolin 1.	0.773
LOC106907888	tpgs1	ENSPMEP00000028816	ENSPMEP00000012252	Zgc:92873.	Uncharacterized protein.	0.451
LOC106907888	tpgs2	ENSPMEP00000028816	ENSPMEP00000013025	Zgc:92873.	Tubulin polyglutamylase complex subunit 2.	0.818
LOC106907888	ttl	ENSPMEP00000028816	ENSPMEP00000018072	Zgc:92873.	Tubulin tyrosine ligase.	0.574
LOC106907888	ttll1	ENSPMEP00000028816	ENSPMEP00000021758	Zgc:92873.	Tubulin tyrosine ligase-like family, member 1.	0.795
LOC106911698	LOC106907888	ENSPMEP00000019154	ENSPMEP00000028816	Uncharacterized protein.	Zgc:92873.	0.499
LOC106928583	LOC106907888	ENSPMEP00000006074	ENSPMEP00000028816	Melanocyte proliferating gene 1.	Zgc:92873.	0.563
LOC106928583	mfsd5	ENSPMEP00000006074	ENSPMEP00000022511	Melanocyte proliferating gene 1.	Major facilitator superfamily domain containing 5.	0.555
LRRC49	LOC106907888	ENSPMEP00000009251	ENSPMEP00000028816	Leucine rich repeat containing 49.	Zgc:92873.	0.823
LRRC49	eif3f	ENSPMEP00000009251	ENSPMEP00000017057	Leucine rich repeat containing 49.	Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.	0.619
LRRC49	nicn1	ENSPMEP00000009251	ENSPMEP00000018246	Leucine rich repeat containing 49.	Nicolin 1.	0.897
LRRC49	tpgs1	ENSPMEP00000009251	ENSPMEP00000012252	Leucine rich repeat containing 49.	Uncharacterized protein.	0.907
LRRC49	tpgs2	ENSPMEP00000009251	ENSPMEP00000013025	Leucine rich repeat containing 49.	Tubulin polyglutamylase complex subunit 2.	0.895
LRRC49	ttl	ENSPMEP00000009251	ENSPMEP00000018072	Leucine rich repeat containing 49.	Tubulin tyrosine ligase.	0.802
LRRC49	ttll1	ENSPMEP00000009251	ENSPMEP00000021758	Leucine rich repeat containing 49.	Tubulin tyrosine ligase-like family, member 1.	0.936