STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPMEP00000032920Uncharacterized protein. (379 aa)    
Predicted Functional Partners:
ENSPMEP00000014077
Uncharacterized protein.
    
  0.504
LOC106926641
Complement C1q C chain.
   
  0.496
lig1
DNA ligase.
    
 0.494
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.490
itgb4
Integrin beta.
    
 0.490
itgb8
Integrin beta; Belongs to the integrin beta chain family.
    
  0.478
mrpl43
Mitochondrial ribosomal protein L43.
    
 
 0.464
MRPL34
Mitochondrial ribosomal protein L34.
    
 
 0.464
col6a1
Collagen, type VI, alpha 1.
   
 0.449
mrps10
Mitochondrial ribosomal protein S10.
    
 
 0.434
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.