STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106921795Si:dkey-237i9.8. (708 aa)    
Predicted Functional Partners:
LOC106906782
Platelet/endothelial cell adhesion molecule 1.
  
  
0.963
LOC106910213
Uncharacterized protein; Cadherins are calcium-dependent cell adhesion proteins.
   
 0.908
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 0.893
LOC106932994
Protein tyrosine phosphatase non-receptor type 11b.
   
 0.856
ptpn11
Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.
   
 0.856
LOC106905232
Protein tyrosine phosphatase non-receptor type 6.
   
 0.856
LOC106931515
Junction plakoglobin a.
   
 0.767
LOC106921026
Uncharacterized protein.
   
 0.746
inpp5d
Inositol polyphosphate-5-phosphatase D.
    
 0.732
aplp2
Amyloid beta (A4) precursor-like protein 2.
    
 0.698
Your Current Organism:
Poecilia mexicana
NCBI taxonomy Id: 48701
Other names: shortfin molly
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.