STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_20235Cyclin-K. (78 aa)    
Predicted Functional Partners:
Ocin01_11108
Cyclin-dependent kinase 12.
    
 0.971
Ocin01_05199
Cyclin-dependent kinase 9; Belongs to the protein kinase superfamily.
   
 0.927
Ocin01_04068
LIM/homeobox protein Lhx1.
    
   0.880
Ocin01_14687
Uncharacterized protein.
   
 0.845
Ocin01_11905
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.845
Ocin01_05559
DM5 domain-containing protein.
   
 0.845
Ocin01_12199
Transcription elongation factor SPT5.
    
 0.830
Ocin01_09700
Nuclear cap-binding protein subunit 1.
    
 0.800
Ocin01_08298
RNA polymerase II elongation factor Ell.
    
 0.799
Ocin01_15067
Cyclin-T1; Belongs to the cyclin family.
   
 
 0.772
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.