STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_19424Uncharacterized protein. (254 aa)    
Predicted Functional Partners:
Ocin01_09815
U3 small nucleolar ribonucleoprotein IMP4.
   
  
 0.714
Ocin01_03752
H/ACA ribonucleoprotein complex subunit 4.
  
 
 0.711
Ocin01_11181
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
   0.662
Ocin01_06060
U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA.
   
   0.660
Ocin01_01030
Putative tRNA pseudouridine synthase 1.
  
 
 0.656
Ocin01_11791
Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily.
   
   0.652
Ocin01_00245
Putative tRNA pseudouridine synthase 2.
  
 
 0.630
Ocin01_01596
WD repeat-containing protein 46.
   
    0.619
Ocin01_12077
Transmembrane protein.
   
    0.616
Ocin01_04651
H/ACA ribonucleoprotein complex subunit 2-like protein.
   
   0.592
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.