Ocin01_19264 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_19264

FMRFamide receptor. (422 aa)

Predicted Functional Partners:

Ocin01_05476

0.847

Ocin01_11621

0.670

Ocin01_00030

0.664

Ocin01_12903

0.650

Ocin01_12902

0.650

Ocin01_01434

0.640

Ocin01_05911

0.628

Ocin01_11670

0.622

Ocin01_10796

0.586

Ocin01_09658

0.537

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_00030	Ocin01_01434	A0A1D2NN27	A0A1D2NJS8	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Guanine nucleotide-binding protein G(S) subunit alpha.	0.924
Ocin01_00030	Ocin01_05476	A0A1D2NN27	A0A1D2N7H5	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Uncharacterized protein.	0.932
Ocin01_00030	Ocin01_05911	A0A1D2NN27	A0A1D2N738	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.998
Ocin01_00030	Ocin01_10796	A0A1D2NN27	A0A1D2MSX1	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Relaxin receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.922
Ocin01_00030	Ocin01_11621	A0A1D2NN27	A0A1D2MQ78	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Muscle M-line assembly protein unc-89.	0.810
Ocin01_00030	Ocin01_12902	A0A1D2NN27	A0A1D2ML94	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Twitchin.	0.969
Ocin01_00030	Ocin01_12903	A0A1D2NN27	A0A1D2ML49	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	Muscle M-line assembly protein unc-89.	0.969
Ocin01_00030	Ocin01_19264	A0A1D2NN27	A0A1D2M366	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	FMRFamide receptor.	0.664
Ocin01_01434	Ocin01_00030	A0A1D2NJS8	A0A1D2NN27	Guanine nucleotide-binding protein G(S) subunit alpha.	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.924
Ocin01_01434	Ocin01_05476	A0A1D2NJS8	A0A1D2N7H5	Guanine nucleotide-binding protein G(S) subunit alpha.	Uncharacterized protein.	0.932
Ocin01_01434	Ocin01_05911	A0A1D2NJS8	A0A1D2N738	Guanine nucleotide-binding protein G(S) subunit alpha.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.825
Ocin01_01434	Ocin01_10796	A0A1D2NJS8	A0A1D2MSX1	Guanine nucleotide-binding protein G(S) subunit alpha.	Relaxin receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.905
Ocin01_01434	Ocin01_11621	A0A1D2NJS8	A0A1D2MQ78	Guanine nucleotide-binding protein G(S) subunit alpha.	Muscle M-line assembly protein unc-89.	0.918
Ocin01_01434	Ocin01_12902	A0A1D2NJS8	A0A1D2ML94	Guanine nucleotide-binding protein G(S) subunit alpha.	Twitchin.	0.836
Ocin01_01434	Ocin01_12903	A0A1D2NJS8	A0A1D2ML49	Guanine nucleotide-binding protein G(S) subunit alpha.	Muscle M-line assembly protein unc-89.	0.836
Ocin01_01434	Ocin01_19264	A0A1D2NJS8	A0A1D2M366	Guanine nucleotide-binding protein G(S) subunit alpha.	FMRFamide receptor.	0.640
Ocin01_05476	Ocin01_00030	A0A1D2N7H5	A0A1D2NN27	Uncharacterized protein.	Tyrosine-protein kinase-like otk; Belongs to the protein kinase superfamily. Tyr protein kinase family.	0.932
Ocin01_05476	Ocin01_01434	A0A1D2N7H5	A0A1D2NJS8	Uncharacterized protein.	Guanine nucleotide-binding protein G(S) subunit alpha.	0.932
Ocin01_05476	Ocin01_05911	A0A1D2N7H5	A0A1D2N738	Uncharacterized protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.999
Ocin01_05476	Ocin01_10796	A0A1D2N7H5	A0A1D2MSX1	Uncharacterized protein.	Relaxin receptor 1; Belongs to the G-protein coupled receptor 1 family.	0.877