Ocin01_17089 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_17089

U4/U6.U5 tri-snRNP-associated protein 1. (280 aa)

Predicted Functional Partners:

Ocin01_08051

0.988

Ocin01_06535

0.988

Ocin01_04623

0.987

Ocin01_03915

0.984

Ocin01_11794

0.983

Ocin01_01813

0.983

Ocin01_00747

0.983

Ocin01_10944

0.982

Ocin01_04823

0.981

Ocin01_14745

0.979

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_00747	Ocin01_01813	A0A1D2NKT0	A0A1D2NHT0	Tr-type G domain-containing protein.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.997
Ocin01_00747	Ocin01_03915	A0A1D2NKT0	A0A1D2NBY6	Tr-type G domain-containing protein.	Uncharacterized protein.	0.999
Ocin01_00747	Ocin01_04623	A0A1D2NKT0	A0A1D2N9W5	Tr-type G domain-containing protein.	U4/U6 small nuclear ribonucleoprotein Prp31.	0.998
Ocin01_00747	Ocin01_04823	A0A1D2NKT0	A0A1D2N9E3	Tr-type G domain-containing protein.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.997
Ocin01_00747	Ocin01_06535	A0A1D2NKT0	A0A1D2N4F4	Tr-type G domain-containing protein.	Calcium homeostasis endoplasmic reticulum protein.	0.975
Ocin01_00747	Ocin01_08051	A0A1D2NKT0	A0A1D2N067	Tr-type G domain-containing protein.	Pre-mRNA-processing factor 6.	0.999
Ocin01_00747	Ocin01_10944	A0A1D2NKT0	A0A1D2MRL5	Tr-type G domain-containing protein.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.998
Ocin01_00747	Ocin01_11794	A0A1D2NKT0	A0A1D2MPC9	Tr-type G domain-containing protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.994
Ocin01_00747	Ocin01_14745	A0A1D2NKT0	A0A1D2MG03	Tr-type G domain-containing protein.	Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.	0.998
Ocin01_00747	Ocin01_17089	A0A1D2NKT0	A0A1D2M9D3	Tr-type G domain-containing protein.	U4/U6.U5 tri-snRNP-associated protein 1.	0.983
Ocin01_01813	Ocin01_00747	A0A1D2NHT0	A0A1D2NKT0	U4/U6 small nuclear ribonucleoprotein Prp3.	Tr-type G domain-containing protein.	0.997
Ocin01_01813	Ocin01_03915	A0A1D2NHT0	A0A1D2NBY6	U4/U6 small nuclear ribonucleoprotein Prp3.	Uncharacterized protein.	0.998
Ocin01_01813	Ocin01_04623	A0A1D2NHT0	A0A1D2N9W5	U4/U6 small nuclear ribonucleoprotein Prp3.	U4/U6 small nuclear ribonucleoprotein Prp31.	0.998
Ocin01_01813	Ocin01_04823	A0A1D2NHT0	A0A1D2N9E3	U4/U6 small nuclear ribonucleoprotein Prp3.	U4/U6 small nuclear ribonucleoprotein Prp4.	0.999
Ocin01_01813	Ocin01_06535	A0A1D2NHT0	A0A1D2N4F4	U4/U6 small nuclear ribonucleoprotein Prp3.	Calcium homeostasis endoplasmic reticulum protein.	0.947
Ocin01_01813	Ocin01_08051	A0A1D2NHT0	A0A1D2N067	U4/U6 small nuclear ribonucleoprotein Prp3.	Pre-mRNA-processing factor 6.	0.998
Ocin01_01813	Ocin01_10944	A0A1D2NHT0	A0A1D2MRL5	U4/U6 small nuclear ribonucleoprotein Prp3.	Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.	0.994
Ocin01_01813	Ocin01_11794	A0A1D2NHT0	A0A1D2MPC9	U4/U6 small nuclear ribonucleoprotein Prp3.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.998
Ocin01_01813	Ocin01_14745	A0A1D2NHT0	A0A1D2MG03	U4/U6 small nuclear ribonucleoprotein Prp3.	Putative ATP-dependent RNA helicase DDX23; Belongs to the DEAD box helicase family.	0.991
Ocin01_01813	Ocin01_17089	A0A1D2NHT0	A0A1D2M9D3	U4/U6 small nuclear ribonucleoprotein Prp3.	U4/U6.U5 tri-snRNP-associated protein 1.	0.983