Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ocin01_00499 | Ocin01_05431 | A0A1D2NLR3 | A0A1D2N7P5 | RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Adenylate kinase 9. | 0.566 |
Ocin01_00499 | Ocin01_05432 | A0A1D2NLR3 | A0A1D2N7M2 | RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Adenylate kinase 9. | 0.566 |
Ocin01_00499 | Ocin01_05911 | A0A1D2NLR3 | A0A1D2N738 | RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Leucine-rich repeat serine/threonine-protein kinase 1. | 0.598 |
Ocin01_00499 | Ocin01_11907 | A0A1D2NLR3 | A0A1D2MP51 | RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | General transcription factor 3C polypeptide 3. | 0.884 |
Ocin01_00499 | Ocin01_17022 | A0A1D2NLR3 | A0A1D2M9K8 | RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Putative zinc finger protein. | 0.588 |
Ocin01_02087 | Ocin01_02507 | A0A1D2NH25 | A0A1D2NFW3 | Lysine-specific demethylase 6A. | BRCA1-associated RING domain protein 1. | 0.617 |
Ocin01_02087 | Ocin01_05431 | A0A1D2NH25 | A0A1D2N7P5 | Lysine-specific demethylase 6A. | Adenylate kinase 9. | 0.866 |
Ocin01_02087 | Ocin01_05432 | A0A1D2NH25 | A0A1D2N7M2 | Lysine-specific demethylase 6A. | Adenylate kinase 9. | 0.866 |
Ocin01_02087 | Ocin01_05476 | A0A1D2NH25 | A0A1D2N7H5 | Lysine-specific demethylase 6A. | Uncharacterized protein. | 0.525 |
Ocin01_02087 | Ocin01_05911 | A0A1D2NH25 | A0A1D2N738 | Lysine-specific demethylase 6A. | Leucine-rich repeat serine/threonine-protein kinase 1. | 0.905 |
Ocin01_02087 | Ocin01_08907 | A0A1D2NH25 | A0A1D2MXL0 | Lysine-specific demethylase 6A. | RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. | 0.957 |
Ocin01_02087 | Ocin01_17022 | A0A1D2NH25 | A0A1D2M9K8 | Lysine-specific demethylase 6A. | Putative zinc finger protein. | 0.608 |
Ocin01_02507 | Ocin01_02087 | A0A1D2NFW3 | A0A1D2NH25 | BRCA1-associated RING domain protein 1. | Lysine-specific demethylase 6A. | 0.617 |
Ocin01_02507 | Ocin01_05476 | A0A1D2NFW3 | A0A1D2N7H5 | BRCA1-associated RING domain protein 1. | Uncharacterized protein. | 0.675 |
Ocin01_02507 | Ocin01_05911 | A0A1D2NFW3 | A0A1D2N738 | BRCA1-associated RING domain protein 1. | Leucine-rich repeat serine/threonine-protein kinase 1. | 0.944 |
Ocin01_02507 | Ocin01_17022 | A0A1D2NFW3 | A0A1D2M9K8 | BRCA1-associated RING domain protein 1. | Putative zinc finger protein. | 0.648 |
Ocin01_05431 | Ocin01_00499 | A0A1D2N7P5 | A0A1D2NLR3 | Adenylate kinase 9. | RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.566 |
Ocin01_05431 | Ocin01_02087 | A0A1D2N7P5 | A0A1D2NH25 | Adenylate kinase 9. | Lysine-specific demethylase 6A. | 0.866 |
Ocin01_05431 | Ocin01_05432 | A0A1D2N7P5 | A0A1D2N7M2 | Adenylate kinase 9. | Adenylate kinase 9. | 0.922 |
Ocin01_05431 | Ocin01_05911 | A0A1D2N7P5 | A0A1D2N738 | Adenylate kinase 9. | Leucine-rich repeat serine/threonine-protein kinase 1. | 0.827 |
page 1 of 3