STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_17012Ubiquitin-60S ribosomal protein L40. (498 aa)    
Predicted Functional Partners:
Ocin01_06525
E3 ubiquitin-protein ligase TRIP12.
   
 0.987
Ocin01_05911
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.984
Ocin01_16747
Fanconi anemia group M protein.
   
 0.980
Ocin01_02288
Fanconi anemia group M protein.
   
 0.980
Ocin01_16366
Rab5 GDP/GTP exchange factor.
    
 0.976
Ocin01_03969
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
   
 0.965
Ocin01_03696
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.965
Ocin01_18357
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.964
Ocin01_15149
Ubiquitin-like modifier-activating enzyme 1; Belongs to the ubiquitin-activating E1 family.
   
 0.964
Ocin01_02708
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.964
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.