STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_16589Transcription elongation factor SPT4-B. (194 aa)    
Predicted Functional Partners:
Ocin01_02776
DNA-directed RNA polymerase II subunit RPB3.
   
 0.973
Ocin01_09766
DNA-directed RNA polymerase II subunit RPB4.
   
 0.972
Ocin01_12199
Transcription elongation factor SPT5.
    
 0.971
Ocin01_14798
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.969
Ocin01_02637
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
   
 0.968
Ocin01_12031
FACT complex subunit spt16.
    
 0.965
Ocin01_20219
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.964
Ocin01_00432
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 0.962
Ocin01_08618
FACT complex subunit SSRP1.
    
 0.960
Ocin01_07678
DNA-directed RNA polymerase II subunit RPB7.
   
 0.959
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.