Ocin01_16221 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_16221

SprT-like domain-containing protein Spartan. (239 aa)

Predicted Functional Partners:

Ocin01_05132

0.951

Ocin01_02397

0.860

Ocin01_02860

0.801

Ocin01_05356

0.798

Ocin01_07751

0.797

Ocin01_14398

0.794

Ocin01_03737

0.794

Ocin01_02245

0.794

Ocin01_03206

0.787

Ocin01_16041

0.781

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_02245	Ocin01_05132	A0A1D2NH57	A0A1D2N8H4	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.671
Ocin01_02245	Ocin01_05356	A0A1D2NH57	A0A1D2N8C3	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Polyubiquitin-A.	0.944
Ocin01_02245	Ocin01_07751	A0A1D2NH57	A0A1D2N200	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Belongs to the AAA ATPase family.	0.660
Ocin01_02245	Ocin01_16221	A0A1D2NH57	A0A1D2MBW9	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	SprT-like domain-containing protein Spartan.	0.794
Ocin01_02397	Ocin01_16221	A0A1D2NGC7	A0A1D2MBW9	Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha.	SprT-like domain-containing protein Spartan.	0.860
Ocin01_02860	Ocin01_05132	A0A1D2NEY2	A0A1D2N8H4	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.671
Ocin01_02860	Ocin01_05356	A0A1D2NEY2	A0A1D2N8C3	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	Polyubiquitin-A.	0.944
Ocin01_02860	Ocin01_07751	A0A1D2NEY2	A0A1D2N200	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Belongs to the AAA ATPase family.	0.698
Ocin01_02860	Ocin01_16221	A0A1D2NEY2	A0A1D2MBW9	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	SprT-like domain-containing protein Spartan.	0.801
Ocin01_03206	Ocin01_05132	A0A1D2NES1	A0A1D2N8H4	Cell division control protein 48; Belongs to the AAA ATPase family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.670
Ocin01_03206	Ocin01_05356	A0A1D2NES1	A0A1D2N8C3	Cell division control protein 48; Belongs to the AAA ATPase family.	Polyubiquitin-A.	0.942
Ocin01_03206	Ocin01_07751	A0A1D2NES1	A0A1D2N200	Cell division control protein 48; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Belongs to the AAA ATPase family.	0.689
Ocin01_03206	Ocin01_16221	A0A1D2NES1	A0A1D2MBW9	Cell division control protein 48; Belongs to the AAA ATPase family.	SprT-like domain-containing protein Spartan.	0.787
Ocin01_03737	Ocin01_05132	A0A1D2NCD5	A0A1D2N8H4	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.671
Ocin01_03737	Ocin01_05356	A0A1D2NCD5	A0A1D2N8C3	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	Polyubiquitin-A.	0.944
Ocin01_03737	Ocin01_07751	A0A1D2NCD5	A0A1D2N200	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	Katanin p60 ATPase-containing subunit A-like 2; Belongs to the AAA ATPase family.	0.684
Ocin01_03737	Ocin01_16221	A0A1D2NCD5	A0A1D2MBW9	Spermatogenesis-associated protein 5; Belongs to the AAA ATPase family.	SprT-like domain-containing protein Spartan.	0.794
Ocin01_05132	Ocin01_02245	A0A1D2N8H4	A0A1D2NH57	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Transitional endoplasmic reticulum ATPase TER94; Belongs to the AAA ATPase family.	0.671
Ocin01_05132	Ocin01_02860	A0A1D2N8H4	A0A1D2NEY2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.	0.671
Ocin01_05132	Ocin01_03206	A0A1D2N8H4	A0A1D2NES1	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Cell division control protein 48; Belongs to the AAA ATPase family.	0.670