STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_15610Histone H2B; Belongs to the histone H2B family. (124 aa)    
Predicted Functional Partners:
Ocin01_13450
Histone H2A; Belongs to the histone H2A family.
   
 0.844
Ocin01_00414
Parafibromin.
    
 0.792
Ocin01_02087
Lysine-specific demethylase 6A.
    
 0.788
Ocin01_08538
RNA polymerase-associated protein CTR9.
    
 0.783
Ocin01_04511
RNA polymerase-associated protein CTR9.
    
 0.783
Ocin01_02776
DNA-directed RNA polymerase II subunit RPB3.
    
 0.779
Ocin01_09477
Ubiquitin-60S ribosomal protein L40.
    
  0.776
Ocin01_02637
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
  0.775
Ocin01_05356
Polyubiquitin-A.
    
  0.772
Ocin01_14798
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
  0.771
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.