STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_14023E3 ubiquitin-protein ligase SIAH1. (452 aa)    
Predicted Functional Partners:
Ocin01_07271
F-box-like/WD repeat-containing protein TBL1XR1.
    
  0.634
Ocin01_00700
Ubiquitin carboxyl-terminal hydrolase.
    
  0.566
Ocin01_14458
Uridine kinase; Belongs to the uridine kinase family.
    
  0.553
Ocin01_08238
Uridine kinase; Belongs to the uridine kinase family.
    
  0.553
Ocin01_03339
Armadillo segment polarity protein.
    
  0.553
Ocin01_03910
Ubiquitin-conjugating enzyme E2 variant 2.
    
   0.550
Ocin01_18247
Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.543
Ocin01_14240
Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.543
Ocin01_07239
Ubiquitin-conjugating enzyme E2 11.
    
 0.543
Ocin01_05898
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.543
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.