STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_12912Putative ATP-dependent RNA helicase DDX4. (531 aa)    
Predicted Functional Partners:
Ocin01_00747
Tr-type G domain-containing protein.
   
 0.850
Ocin01_07399
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.843
Ocin01_08051
Pre-mRNA-processing factor 6.
    
 0.841
Ocin01_06362
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
   
 0.824
Ocin01_03367
Splicing factor 3B subunit 3.
   
 0.818
Ocin01_00416
Splicing factor 3B subunit 1.
   
 0.816
Ocin01_06535
Calcium homeostasis endoplasmic reticulum protein.
    
 0.809
Ocin01_10998
Protein PAT1 1.
   
 0.802
Ocin01_08792
Enhancer of mRNA-decapping protein 3.
   
 0.801
Ocin01_03081
Protein painting of fourth.
   
 0.801
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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