STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_11708DNA-directed RNA polymerase II subunit RPB2. (462 aa)    
Predicted Functional Partners:
Ocin01_02776
DNA-directed RNA polymerase II subunit RPB3.
  
 0.996
Ocin01_02637
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
  
 0.995
Ocin01_00432
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
  
 0.995
Ocin01_20219
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.992
Ocin01_14798
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.992
Ocin01_09766
DNA-directed RNA polymerase II subunit RPB4.
    
 0.992
Ocin01_12199
Transcription elongation factor SPT5.
   
 0.990
Ocin01_03448
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.987
Ocin01_01254
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
    
 0.987
Ocin01_12409
DNA excision repair protein ERCC-6.
    
 0.986
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.