Ocin01_10998 protein (Orchesella cincta) - STRING interaction network

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Score

Ocin01_10998

Protein PAT1 1. (844 aa)

Predicted Functional Partners:

Ocin01_11541

0.999

LSM1

0.999

Ocin01_10405

0.998

Ocin01_10369

0.998

Ocin01_02917

0.998

LSM5

0.998

Ocin01_00219

0.998

LSM3

0.996

Ocin01_10703

0.993

Ocin01_09418

0.993

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM3	A0A1D2NFA3	A0A1D2NEY1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.966
LSM1	LSM5	A0A1D2NFA3	A0A1D2NIW6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.994
LSM1	Ocin01_00219	A0A1D2NFA3	A0A1D2NMF8	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.993
LSM1	Ocin01_02917	A0A1D2NFA3	A0A1D2NFN0	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	M7GpppN-mRNA hydrolase.	0.925
LSM1	Ocin01_10369	A0A1D2NFA3	A0A1D2MTS4	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.994
LSM1	Ocin01_10405	A0A1D2NFA3	A0A1D2MTP8	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.997
LSM1	Ocin01_10703	A0A1D2NFA3	A0A1D2MS83	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	5'-3' exoribonuclease 1.	0.974
LSM1	Ocin01_10998	A0A1D2NFA3	A0A1D2MRL1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Protein PAT1 1.	0.999
LSM1	Ocin01_11541	A0A1D2NFA3	A0A1D2MQ36	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm7.	0.994
LSM3	LSM1	A0A1D2NEY1	A0A1D2NFA3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.966
LSM3	LSM5	A0A1D2NEY1	A0A1D2NIW6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.990
LSM3	Ocin01_00219	A0A1D2NEY1	A0A1D2NMF8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.995
LSM3	Ocin01_02917	A0A1D2NEY1	A0A1D2NFN0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	M7GpppN-mRNA hydrolase.	0.874
LSM3	Ocin01_10369	A0A1D2NEY1	A0A1D2MTS4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.988
LSM3	Ocin01_10405	A0A1D2NEY1	A0A1D2MTP8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative ATP-dependent RNA helicase me31b; Belongs to the DEAD box helicase family.	0.855
LSM3	Ocin01_10703	A0A1D2NEY1	A0A1D2MS83	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1.	0.924
LSM3	Ocin01_10998	A0A1D2NEY1	A0A1D2MRL1	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Protein PAT1 1.	0.996
LSM3	Ocin01_11541	A0A1D2NEY1	A0A1D2MQ36	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm7.	0.986
LSM5	LSM1	A0A1D2NIW6	A0A1D2NFA3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.994
LSM5	LSM3	A0A1D2NIW6	A0A1D2NEY1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.990