STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_09900Protein groucho-2. (68 aa)    
Predicted Functional Partners:
Ocin01_07906
Protein pangolin, isoforms A/H/I/S.
    
 0.916
Ocin01_00007
Protein hairless.
    
 0.883
Ocin01_20240
Histone deacetylase Rpd3.
    
 0.767
Ocin01_17688
Histone deacetylase 1.
    
 0.767
Ocin01_13657
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.743
Ocin01_11075
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.743
Ocin01_00949
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
  0.715
Ocin01_03695
Protein deadpan.
    
 0.710
Ocin01_10820
Histone deacetylase; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events.
    
 0.703
Ocin01_06615
Histone deacetylase 6.
    
 0.703
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.