STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_07948Sorting nexin-11. (244 aa)    
Predicted Functional Partners:
Ocin01_03999
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 0.985
Ocin01_14844
Vacuolar protein sorting-associated protein 26B.
    
 0.875
Ocin01_14492
Vacuolar protein sorting-associated protein 26B-A.
    
 0.875
Ocin01_01846
Vacuolar protein sorting-associated protein 26B.
    
 0.875
Ocin01_01922
Von Willebrand factor A domain-containing protein 8.
    
 0.875
Ocin01_06407
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
   
 0.866
Ocin01_06967
Ribosomal protein S6 kinase delta-1.
     
 0.848
Ocin01_01409
Protein wntless.
    
 0.816
Ocin01_08505
Sorting nexin-13.
     
 0.653
Ocin01_06503
Lysozyme.
     
 0.637
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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