STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_07958Partner of Y14 and mago. (222 aa)    
Predicted Functional Partners:
Ocin01_13446
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.991
Ocin01_01410
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.991
Ocin01_00005
Eukaryotic initiation factor 4A-III; Belongs to the DEAD box helicase family.
    
 
 0.711
Ocin01_03741
Regulator of nonsense transcripts 3A.
    
 
 0.587
Ocin01_04298
Protein AAR2.
   
  
 0.534
Ocin01_07450
Putative sulfite oxidase, mitochondrial.
      
 0.522
Ocin01_02956
Translocation protein SEC63.
      
 0.512
Ocin01_14674
Reticulon-4-interacting protein 1, mitochondrial.
    
   0.472
Ocin01_04538
Reticulon-4-interacting protein 1, mitochondrial.
    
   0.472
Ocin01_11225
Stomatin-like protein 2, mitochondrial.
      
 0.418
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.