STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_07478Histone H2A; Belongs to the histone H2A family. (125 aa)    
Predicted Functional Partners:
Ocin01_02087
Lysine-specific demethylase 6A.
    
 0.824
Ocin01_13450
Histone H2A; Belongs to the histone H2A family.
  
0.815
Ocin01_11386
Ubiquitin-60S ribosomal protein L40.
   
  0.804
Ocin01_09477
Ubiquitin-60S ribosomal protein L40.
    
 0.799
Ocin01_05356
Polyubiquitin-A.
   
  0.794
Ocin01_12087
Tumor suppressor p53-binding protein 1.
    
 0.790
Ocin01_02776
DNA-directed RNA polymerase II subunit RPB3.
    
 0.787
Ocin01_06239
Putative histone-binding protein lin-53.
    
 0.781
Ocin01_10738
Chromatin-remodeling complex ATPase chain Iswi.
    
 0.779
Ocin01_06626
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
    
 0.779
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.