STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_07051Lipopolysaccharide-induced tumor necrosis factor-alpha factor. (121 aa)    
Predicted Functional Partners:
Ocin01_16747
Fanconi anemia group M protein.
    
 0.954
Ocin01_02288
Fanconi anemia group M protein.
    
 0.954
Ocin01_15885
Replication protein A 32 kDa subunit.
   
 0.777
Ocin01_04427
Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.
    
 0.776
Ocin01_12483
Lipopolysaccharide-induced tumor necrosis factor-alpha factor.
  
  
 
0.722
Ocin01_12189
Myb-related protein A.
   
 0.711
Ocin01_06239
Putative histone-binding protein lin-53.
    
 0.707
Ocin01_01747
Protein lin-52.
    
 0.707
Ocin01_08999
Protein lin-54.
    
 0.705
Ocin01_13089
Receptor protein-tyrosine kinase.
    
 0.687
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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