Ocin01_07080 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_07080

Cell wall protein PRY3. (365 aa)

Predicted Functional Partners:

Ocin01_09864

0.786

Ocin01_16671

0.512

Ocin01_13777

0.480

Ocin01_06876

0.458

Ocin01_06494

0.443

Ocin01_14554

0.439

Ocin01_13776

0.432

Ocin01_16673

0.426

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_06494	Ocin01_06876	A0A1D2N4I7	A0A1D2N3K6	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.903
Ocin01_06494	Ocin01_07080	A0A1D2N4I7	A0A1D2N3U4	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Cell wall protein PRY3.	0.443
Ocin01_06494	Ocin01_09864	A0A1D2N4I7	A0A1D2MVX7	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.882
Ocin01_06494	Ocin01_13776	A0A1D2N4I7	A0A1D2MJ23	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Golgi-associated plant pathogenesis-related protein 1.	0.443
Ocin01_06494	Ocin01_13777	A0A1D2N4I7	A0A1D2MJC5	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Golgi-associated plant pathogenesis-related protein 1.	0.443
Ocin01_06494	Ocin01_14554	A0A1D2N4I7	A0A1D2MGK8	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Glyoxylate reductase/hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.882
Ocin01_06494	Ocin01_16671	A0A1D2N4I7	A0A1D2MAJ4	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Golgi-associated plant pathogenesis-related protein 1.	0.443
Ocin01_06494	Ocin01_16673	A0A1D2N4I7	A0A1D2MAQ0	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	Golgi-associated plant pathogenesis-related protein 1.	0.443
Ocin01_06876	Ocin01_06494	A0A1D2N3K6	A0A1D2N4I7	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	0.903
Ocin01_06876	Ocin01_07080	A0A1D2N3K6	A0A1D2N3U4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Cell wall protein PRY3.	0.458
Ocin01_06876	Ocin01_09864	A0A1D2N3K6	A0A1D2MVX7	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.803
Ocin01_06876	Ocin01_13776	A0A1D2N3K6	A0A1D2MJ23	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Golgi-associated plant pathogenesis-related protein 1.	0.458
Ocin01_06876	Ocin01_13777	A0A1D2N3K6	A0A1D2MJC5	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Golgi-associated plant pathogenesis-related protein 1.	0.458
Ocin01_06876	Ocin01_14554	A0A1D2N3K6	A0A1D2MGK8	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Glyoxylate reductase/hydroxypyruvate reductase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.	0.848
Ocin01_06876	Ocin01_16671	A0A1D2N3K6	A0A1D2MAJ4	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Golgi-associated plant pathogenesis-related protein 1.	0.458
Ocin01_06876	Ocin01_16673	A0A1D2N3K6	A0A1D2MAQ0	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	Golgi-associated plant pathogenesis-related protein 1.	0.458
Ocin01_07080	Ocin01_06494	A0A1D2N3U4	A0A1D2N4I7	Cell wall protein PRY3.	L-2-hydroxyglutarate dehydrogenase, mitochondrial.	0.443
Ocin01_07080	Ocin01_06876	A0A1D2N3U4	A0A1D2N3K6	Cell wall protein PRY3.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.458
Ocin01_07080	Ocin01_09864	A0A1D2N3U4	A0A1D2MVX7	Cell wall protein PRY3.	Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.	0.786
Ocin01_07080	Ocin01_13776	A0A1D2N3U4	A0A1D2MJ23	Cell wall protein PRY3.	Golgi-associated plant pathogenesis-related protein 1.	0.432