STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_06484BTB/POZ domain-containing protein KCTD9. (342 aa)    
Predicted Functional Partners:
Ocin01_03844
DNA topoisomerase 2; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double- strand breaks.
   
 
 0.953
Ocin01_01779
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.864
Ocin01_16908
Molybdenum cofactor biosynthesis protein 1.
  
 
  0.810
Ocin01_04594
Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase MESH1.
    
  0.804
Ocin01_08633
Cullin-3; Belongs to the cullin family.
    
 
 0.719
Ocin01_05665
DNA repair protein RAD50.
    
  0.707
Ocin01_17715
SET domain-containing protein.
    
  0.701
Ocin01_06091
Histone-lysine N-methyltransferase Suv4-20.
    
  0.701
Ocin01_01610
Histone-lysine N-methyltransferase Suv4-20.
    
  0.701
Ocin01_18508
Serine/threonine-protein phosphatase CPPED1.
    
  0.691
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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