STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_05862Mitochondrial genome maintenance exonuclease 1. (166 aa)    
Predicted Functional Partners:
Ocin01_11269
Evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial.
    
   0.628
Ocin01_13367
Cytochrome c oxidase assembly factor 7.
      
 0.515
Ocin01_03923
Twinkle protein, mitochondrial.
      
 0.515
Ocin01_02671
DNA mismatch repair protein Mlh3.
      
 0.509
Ocin01_14207
Carnosine N-methyltransferase.
      
 0.477
Ocin01_02773
DNA polymerase subunit gamma-1.
    
 
 0.451
Ocin01_03118
Ribonuclease H1.
    
 
 0.420
Ocin01_07958
Partner of Y14 and mago.
      
 0.410
Ocin01_14459
Glycine--tRNA ligase.
      
 0.408
Ocin01_00944
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
      
 0.400
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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