Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ocin01_00944 | Ocin01_02773 | A0A1D2NKD0 | A0A1D2NF39 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | DNA polymerase subunit gamma-1. | 0.569 |
Ocin01_00944 | Ocin01_03923 | A0A1D2NKD0 | A0A1D2NBZ0 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | Twinkle protein, mitochondrial. | 0.573 |
Ocin01_00944 | Ocin01_05862 | A0A1D2NKD0 | A0A1D2N6D4 | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | Mitochondrial genome maintenance exonuclease 1. | 0.400 |
Ocin01_02671 | Ocin01_05862 | A0A1D2NFH0 | A0A1D2N6D4 | DNA mismatch repair protein Mlh3. | Mitochondrial genome maintenance exonuclease 1. | 0.509 |
Ocin01_02773 | Ocin01_00944 | A0A1D2NF39 | A0A1D2NKD0 | DNA polymerase subunit gamma-1. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | 0.569 |
Ocin01_02773 | Ocin01_03118 | A0A1D2NF39 | A0A1D2NEA3 | DNA polymerase subunit gamma-1. | Ribonuclease H1. | 0.866 |
Ocin01_02773 | Ocin01_03923 | A0A1D2NF39 | A0A1D2NBZ0 | DNA polymerase subunit gamma-1. | Twinkle protein, mitochondrial. | 0.886 |
Ocin01_02773 | Ocin01_05862 | A0A1D2NF39 | A0A1D2N6D4 | DNA polymerase subunit gamma-1. | Mitochondrial genome maintenance exonuclease 1. | 0.451 |
Ocin01_02773 | Ocin01_14459 | A0A1D2NF39 | A0A1D2MGU2 | DNA polymerase subunit gamma-1. | Glycine--tRNA ligase. | 0.967 |
Ocin01_03118 | Ocin01_02773 | A0A1D2NEA3 | A0A1D2NF39 | Ribonuclease H1. | DNA polymerase subunit gamma-1. | 0.866 |
Ocin01_03118 | Ocin01_03923 | A0A1D2NEA3 | A0A1D2NBZ0 | Ribonuclease H1. | Twinkle protein, mitochondrial. | 0.513 |
Ocin01_03118 | Ocin01_05862 | A0A1D2NEA3 | A0A1D2N6D4 | Ribonuclease H1. | Mitochondrial genome maintenance exonuclease 1. | 0.420 |
Ocin01_03118 | Ocin01_14459 | A0A1D2NEA3 | A0A1D2MGU2 | Ribonuclease H1. | Glycine--tRNA ligase. | 0.537 |
Ocin01_03923 | Ocin01_00944 | A0A1D2NBZ0 | A0A1D2NKD0 | Twinkle protein, mitochondrial. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | 0.573 |
Ocin01_03923 | Ocin01_02773 | A0A1D2NBZ0 | A0A1D2NF39 | Twinkle protein, mitochondrial. | DNA polymerase subunit gamma-1. | 0.886 |
Ocin01_03923 | Ocin01_03118 | A0A1D2NBZ0 | A0A1D2NEA3 | Twinkle protein, mitochondrial. | Ribonuclease H1. | 0.513 |
Ocin01_03923 | Ocin01_05862 | A0A1D2NBZ0 | A0A1D2N6D4 | Twinkle protein, mitochondrial. | Mitochondrial genome maintenance exonuclease 1. | 0.515 |
Ocin01_03923 | Ocin01_14459 | A0A1D2NBZ0 | A0A1D2MGU2 | Twinkle protein, mitochondrial. | Glycine--tRNA ligase. | 0.446 |
Ocin01_05862 | Ocin01_00944 | A0A1D2N6D4 | A0A1D2NKD0 | Mitochondrial genome maintenance exonuclease 1. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. | 0.400 |
Ocin01_05862 | Ocin01_02671 | A0A1D2N6D4 | A0A1D2NFH0 | Mitochondrial genome maintenance exonuclease 1. | DNA mismatch repair protein Mlh3. | 0.509 |
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