STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_05683Vesicle-trafficking protein SEC22b-B; Belongs to the synaptobrevin family. (186 aa)    
Predicted Functional Partners:
Ocin01_18713
t-SNARE coiled-coil homology domain-containing protein.
   
 0.992
Ocin01_01637
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
    
 0.992
Ocin01_04978
Synaptobrevin YKT6; Belongs to the synaptobrevin family.
    
 0.989
Ocin01_12083
Syntaxin-18.
   
 0.983
Ocin01_10402
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.980
Ocin01_16177
Protein transport protein Sec24A.
    
 0.979
Ocin01_06595
Protein sly1; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.978
Ocin01_02135
Vesicle transport protein USE1.
    
 0.978
Ocin01_16128
Syntaxin-7; Belongs to the syntaxin family.
    
 0.975
Ocin01_05528
t-SNARE coiled-coil homology domain-containing protein.
    
 0.975
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.