STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_05513NudC domain-containing protein 3. (318 aa)    
Predicted Functional Partners:
Ocin01_03478
Peptidyl-prolyl cis-trans isomerase.
   
  0.968
Ocin01_17141
Lissencephaly-1 A.
   
 0.783
Ocin01_11095
Lissencephaly-1.
   
 0.763
Ocin01_00562
Nuclear distribution protein nudE-like 1.
     
 0.722
Ocin01_01358
Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.
   
 0.695
Ocin01_05850
Mitotic checkpoint serine/threonine-protein kinase BUB1 beta.
     
 0.659
Ocin01_03346
CLIP-associating protein 1.
     
 0.659
Ocin01_10514
Cytoplasmic dynein 1 intermediate chain 2.
    
 0.656
Ocin01_11775
40S ribosomal protein S27.
   
 
 0.625
Ocin01_15525
Mitotic spindle assembly checkpoint protein MAD1.
    
  0.622
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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