STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_04973Microtubule-actin cross-linking factor 1. (154 aa)    
Predicted Functional Partners:
Ocin01_20175
Integrin beta-PS.
   
 0.800
Ocin01_11831
Integrin beta; Belongs to the integrin beta chain family.
   
 0.800
Ocin01_08773
Integrin beta.
   
 0.800
Ocin01_05340
Integrin beta; Belongs to the integrin beta chain family.
   
 0.800
Ocin01_03339
Armadillo segment polarity protein.
    
 0.800
Ocin01_02736
Transcription initiation protein SPT3.
    
 0.772
Ocin01_11829
Integrin beta-PS.
    
  0.744
Ocin01_15018
Vitrin.
    
 0.738
Ocin01_11900
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.717
Ocin01_11381
Intersectin-2.
    
 0.710
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.