STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_04854Transmembrane protein. (297 aa)    
Predicted Functional Partners:
Ocin01_03910
Ubiquitin-conjugating enzyme E2 variant 2.
 
  
  0.975
Ocin01_16029
Ubiquitin.
    
 0.929
Ocin01_09477
Ubiquitin-60S ribosomal protein L40.
    
 0.929
Ocin01_17613
Ubiquitin-60S ribosomal protein L40.
    
 0.850
Ocin01_15412
Ubiquitin-60S ribosomal protein L40.
    
 0.850
Ocin01_15413
Ubiquitin.
    
 0.850
Ocin01_11386
Ubiquitin-60S ribosomal protein L40.
    
 0.850
Ocin01_11124
Gamma-glutamylcyclotransferase.
    
 0.850
Ocin01_18247
Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.805
Ocin01_14240
Ubiquitin-conjugating enzyme E2-24 kDa; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.805
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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