Ocin01_04300 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_04300

DNA-directed RNA polymerase III subunit RPC5. (541 aa)

Predicted Functional Partners:

Ocin01_13445

0.999

Ocin01_07195

0.999

Ocin01_06629

0.999

Ocin01_06064

0.999

Ocin01_00661

0.999

Ocin01_00499

0.999

Ocin01_20219

0.998

Ocin01_09870

0.998

Ocin01_02637

0.998

Ocin01_00432

0.998

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_00432	Ocin01_00499	A0A1D2NM08	A0A1D2NLR3	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
Ocin01_00432	Ocin01_00661	A0A1D2NM08	A0A1D2NL42	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Ocin01_00432	Ocin01_02637	A0A1D2NM08	A0A1D2NGB2	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
Ocin01_00432	Ocin01_04300	A0A1D2NM08	A0A1D2NAW7	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC5.	0.998
Ocin01_00432	Ocin01_06064	A0A1D2NM08	A0A1D2N5R9	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
Ocin01_00432	Ocin01_06629	A0A1D2NM08	A0A1D2N493	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC8.	0.999
Ocin01_00432	Ocin01_07195	A0A1D2NM08	A0A1D2N2K0	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.998
Ocin01_00432	Ocin01_09870	A0A1D2NM08	A0A1D2MVI1	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	Uncharacterized protein.	0.997
Ocin01_00432	Ocin01_13445	A0A1D2NM08	A0A1D2MJU3	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerase III subunit RPC4.	0.998
Ocin01_00432	Ocin01_20219	A0A1D2NM08	A0A1D2M0I2	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.999
Ocin01_00499	Ocin01_00432	A0A1D2NLR3	A0A1D2NM08	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC2.	0.998
Ocin01_00499	Ocin01_00661	A0A1D2NLR3	A0A1D2NL42	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
Ocin01_00499	Ocin01_02637	A0A1D2NLR3	A0A1D2NGB2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC1.	0.999
Ocin01_00499	Ocin01_04300	A0A1D2NLR3	A0A1D2NAW7	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC5.	0.999
Ocin01_00499	Ocin01_06064	A0A1D2NLR3	A0A1D2N5R9	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I and III subunit RPAC1.	0.999
Ocin01_00499	Ocin01_06629	A0A1D2NLR3	A0A1D2N493	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC8.	0.999
Ocin01_00499	Ocin01_07195	A0A1D2NLR3	A0A1D2N2K0	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.999
Ocin01_00499	Ocin01_09870	A0A1D2NLR3	A0A1D2MVI1	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
Ocin01_00499	Ocin01_13445	A0A1D2NLR3	A0A1D2MJU3	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerase III subunit RPC4.	0.999
Ocin01_00499	Ocin01_20219	A0A1D2NLR3	A0A1D2M0I2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	DNA-directed RNA polymerases I, II, and III subunit RPABC5.	0.997