STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_04354DNA repair protein. (712 aa)    
Predicted Functional Partners:
Ocin01_01583
General transcription factor IIH subunit 1.
    
 0.994
Ocin01_12629
DNA excision repair protein haywire.
   
 0.985
Ocin01_09624
Centrin-1.
    
 0.969
Ocin01_04204
Centrin-2.
    
 0.969
Ocin01_15801
Dipeptidase; Belongs to the metallo-dependent hydrolases superfamily. Peptidase M19 family.
    
 0.965
Ocin01_15520
TFIIH basal transcription factor complex helicase XPD subunit.
    
 0.949
Ocin01_00325
DNA damage-binding protein 2.
   
 0.934
Ocin01_02329
General transcription factor IIH subunit.
    
 0.932
Ocin01_02021
DNA repair protein.
    
 0.927
Ocin01_05356
Polyubiquitin-A.
    
 0.908
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.