STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_03330Vacuolar protein sorting-associated protein 54. (988 aa)    
Predicted Functional Partners:
Ocin01_04061
Vacuolar protein sorting-associated protein 53.
   
 0.992
Ocin01_01721
Vacuolar protein sorting-associated protein 53.
   
 0.992
Ocin01_18819
Vacuolar protein sorting-associated protein 52.
    
 0.989
Ocin01_18516
Vacuolar protein sorting-associated protein 52.
    
 0.989
Ocin01_06741
Vacuolar protein sorting-associated protein 51.
   
 0.971
Ocin01_09768
Syndetin.
   
 
 0.932
Ocin01_01441
Protein TSSC1.
    
 
 0.925
Ocin01_10919
Syntaxin-16; Belongs to the syntaxin family.
    
 0.922
Ocin01_00111
Syntaxin-6.
    
 0.883
Ocin01_02084
Ras-related protein Rab6.
    
 0.876
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.