STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_03217Ras-related protein Rab-33B. (216 aa)    
Predicted Functional Partners:
Ocin01_13452
Autophagy-related protein 16-1.
    
 0.971
Ocin01_03504
Autophagy-related protein 16-1.
    
 0.971
Ocin01_12197
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.878
Ocin01_13516
Trafficking protein particle complex subunit 6B.
   
 0.874
Ocin01_09464
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.874
Ocin01_02108
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.874
Ocin01_02648
Flavin-containing monooxygenase.
    
 0.870
Ocin01_01216
Putative trafficking protein particle complex subunit 2.
    
 0.869
Ocin01_02764
Trafficking protein particle complex subunit 8.
    
 0.868
Ocin01_03920
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.867
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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