STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_03150RNA-binding protein 47. (532 aa)    
Predicted Functional Partners:
Ocin01_16047
Heterogeneous nuclear ribonucleoprotein K.
   
 0.786
Ocin01_07885
RNA-binding protein cabeza.
   
 0.774
Ocin01_01507
Heterogeneous nuclear ribonucleoprotein F.
   
 0.752
Ocin01_06013
Transformer-2 protein beta.
   
 0.748
Ocin01_09754
Heterogeneous nuclear ribonucleoprotein L.
   
 0.744
Ocin01_16046
Heterogeneous nuclear ribonucleoprotein K.
   
 0.735
Ocin01_01346
Y-box factor.
   
 0.735
Ocin01_16766
Heterogeneous nuclear ribonucleoprotein A1, A2/B1.
   
 0.733
Ocin01_11134
Bifunctional glutamate/proline--tRNA ligase.
   
 
 0.714
Ocin01_18290
Heterogeneous nuclear ribonucleoprotein U-like protein 1.
   
 0.698
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.