Ocin01_02609 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_02609

Mitochondrial import inner membrane translocase subunit Tim22. (186 aa)

Predicted Functional Partners:

Ocin01_14688

0.987

Ocin01_02816

0.987

Ocin01_01005

0.930

Ocin01_04015

0.908

Ocin01_06458

0.907

Ocin01_04937

0.907

Ocin01_10641

0.882

Ocin01_03911

0.866

Ocin01_14031

0.857

Ocin01_08431

0.857

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_01005	Ocin01_02609	A0A1D2NK89	A0A1D2NFQ1	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim22.	0.930
Ocin01_01005	Ocin01_02816	A0A1D2NK89	A0A1D2NF46	Uncharacterized protein.	Uncharacterized protein.	0.968
Ocin01_01005	Ocin01_14688	A0A1D2NK89	A0A1D2MGH9	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim10 B.	0.951
Ocin01_02609	Ocin01_01005	A0A1D2NFQ1	A0A1D2NK89	Mitochondrial import inner membrane translocase subunit Tim22.	Uncharacterized protein.	0.930
Ocin01_02609	Ocin01_02816	A0A1D2NFQ1	A0A1D2NF46	Mitochondrial import inner membrane translocase subunit Tim22.	Uncharacterized protein.	0.987
Ocin01_02609	Ocin01_03911	A0A1D2NFQ1	A0A1D2NC09	Mitochondrial import inner membrane translocase subunit Tim22.	Cytochrome c1, heme protein, mitochondrial.	0.866
Ocin01_02609	Ocin01_04015	A0A1D2NFQ1	A0A1D2NC43	Mitochondrial import inner membrane translocase subunit Tim22.	Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial.	0.908
Ocin01_02609	Ocin01_04937	A0A1D2NFQ1	A0A1D2N9R5	Mitochondrial import inner membrane translocase subunit Tim22.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13.	0.907
Ocin01_02609	Ocin01_06458	A0A1D2NFQ1	A0A1D2N4R1	Mitochondrial import inner membrane translocase subunit Tim22.	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8; Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.907
Ocin01_02609	Ocin01_08431	A0A1D2NFQ1	A0A1D2MYW9	Mitochondrial import inner membrane translocase subunit Tim22.	Homeobox protein aristaless-like 4.	0.857
Ocin01_02609	Ocin01_10641	A0A1D2NFQ1	A0A1D2MTL5	Mitochondrial import inner membrane translocase subunit Tim22.	Mitochondrial import inner membrane translocase subunit Tim23.	0.882
Ocin01_02609	Ocin01_14031	A0A1D2NFQ1	A0A1D2MI19	Mitochondrial import inner membrane translocase subunit Tim22.	Protein gooseberry-neuro.	0.857
Ocin01_02609	Ocin01_14688	A0A1D2NFQ1	A0A1D2MGH9	Mitochondrial import inner membrane translocase subunit Tim22.	Mitochondrial import inner membrane translocase subunit Tim10 B.	0.987
Ocin01_02816	Ocin01_01005	A0A1D2NF46	A0A1D2NK89	Uncharacterized protein.	Uncharacterized protein.	0.968
Ocin01_02816	Ocin01_02609	A0A1D2NF46	A0A1D2NFQ1	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim22.	0.987
Ocin01_02816	Ocin01_04015	A0A1D2NF46	A0A1D2NC43	Uncharacterized protein.	Putative succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial.	0.910
Ocin01_02816	Ocin01_08431	A0A1D2NF46	A0A1D2MYW9	Uncharacterized protein.	Homeobox protein aristaless-like 4.	0.871
Ocin01_02816	Ocin01_10641	A0A1D2NF46	A0A1D2MTL5	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim23.	0.908
Ocin01_02816	Ocin01_14031	A0A1D2NF46	A0A1D2MI19	Uncharacterized protein.	Protein gooseberry-neuro.	0.871
Ocin01_02816	Ocin01_14688	A0A1D2NF46	A0A1D2MGH9	Uncharacterized protein.	Mitochondrial import inner membrane translocase subunit Tim10 B.	0.999