STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_02811Cell growth-regulating nucleolar protein. (318 aa)    
Predicted Functional Partners:
Ocin01_17488
Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.
   
   0.956
Ocin01_04651
H/ACA ribonucleoprotein complex subunit 2-like protein.
   
   0.953
Ocin01_00934
Ribosomal RNA processing protein 1.
   
 
 0.945
Ocin01_17937
Ribosome production factor 2.
   
   0.944
Ocin01_03595
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
   0.944
Ocin01_12421
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.928
Ocin01_09444
RNA helicase.
   
 
 0.922
Ocin01_09576
PIN2/TERF1-interacting telomerase inhibitor 1.
   
   0.916
Ocin01_04941
Surfeit locus protein 6.
   
   0.914
Ocin01_12987
Suppressor of SWI4 1.
   
   0.913
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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