STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_02429Transmembrane protein. (653 aa)    
Predicted Functional Partners:
Ocin01_02956
Translocation protein SEC63.
   
 
 0.636
Ocin01_18574
Protein transport protein Sec61 subunit alpha isoform 2.
   
  
 0.568
Ocin01_12726
Transmembrane protein.
      
 0.522
Ocin01_00372
tRNA (Guanine(10)-N2)-methyltransferase.
      
 0.515
Ocin01_00079
Mannosyl-oligosaccharide glucosidase.
   
  
 0.497
Ocin01_08374
Uncharacterized protein.
      
 0.478
Ocin01_01559
Protein transport protein Sec61 subunit beta; Necessary for protein translocation in the endoplasmic reticulum.
    
 
 0.445
Ocin01_14585
Transmembrane protein.
      
 0.406
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.