Ocin01_02366 protein (Orchesella cincta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ocin01_02366

Histone-lysine N-methyltransferase trithorax. (316 aa)

Predicted Functional Partners:

Ocin01_08008

0.984

Ocin01_02259

0.973

Ocin01_02987

0.899

Ocin01_16418

0.896

Ocin01_01389

0.896

Ocin01_01390

0.896

Ocin01_10054

0.888

Ocin01_14525

0.878

Ocin01_09063

0.878

Ocin01_06167

0.873

Your Current Organism:

Orchesella cincta

NCBI taxonomy Id: 48709
Other names: O. cincta

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ocin01_01389	Ocin01_01390	A0A1D2NJ08	A0A1D2NJW7	Retinoblastoma-binding protein 5.	Retinoblastoma-binding protein 5.	0.502
Ocin01_01389	Ocin01_02259	A0A1D2NJ08	A0A1D2NGQ9	Retinoblastoma-binding protein 5.	DnaJ protein 1.	0.868
Ocin01_01389	Ocin01_02366	A0A1D2NJ08	A0A1D2NG96	Retinoblastoma-binding protein 5.	Histone-lysine N-methyltransferase trithorax.	0.896
Ocin01_01389	Ocin01_06167	A0A1D2NJ08	A0A1D2N616	Retinoblastoma-binding protein 5.	Histone-lysine N-methyltransferase 2C.	0.898
Ocin01_01389	Ocin01_08008	A0A1D2NJ08	A0A1D2N0E0	Retinoblastoma-binding protein 5.	Set1/Ash2 histone methyltransferase complex subunit ASH2.	0.985
Ocin01_01389	Ocin01_09063	A0A1D2NJ08	A0A1D2MXC1	Retinoblastoma-binding protein 5.	DnaJ subfamily B member 9.	0.744
Ocin01_01389	Ocin01_10054	A0A1D2NJ08	A0A1D2MUP0	Retinoblastoma-binding protein 5.	Hepatoma-derived growth factor.	0.427
Ocin01_01389	Ocin01_14525	A0A1D2NJ08	A0A1D2MGM5	Retinoblastoma-binding protein 5.	DnaJ subfamily B member 9.	0.744
Ocin01_01390	Ocin01_01389	A0A1D2NJW7	A0A1D2NJ08	Retinoblastoma-binding protein 5.	Retinoblastoma-binding protein 5.	0.502
Ocin01_01390	Ocin01_02259	A0A1D2NJW7	A0A1D2NGQ9	Retinoblastoma-binding protein 5.	DnaJ protein 1.	0.868
Ocin01_01390	Ocin01_02366	A0A1D2NJW7	A0A1D2NG96	Retinoblastoma-binding protein 5.	Histone-lysine N-methyltransferase trithorax.	0.896
Ocin01_01390	Ocin01_06167	A0A1D2NJW7	A0A1D2N616	Retinoblastoma-binding protein 5.	Histone-lysine N-methyltransferase 2C.	0.898
Ocin01_01390	Ocin01_08008	A0A1D2NJW7	A0A1D2N0E0	Retinoblastoma-binding protein 5.	Set1/Ash2 histone methyltransferase complex subunit ASH2.	0.985
Ocin01_01390	Ocin01_09063	A0A1D2NJW7	A0A1D2MXC1	Retinoblastoma-binding protein 5.	DnaJ subfamily B member 9.	0.744
Ocin01_01390	Ocin01_10054	A0A1D2NJW7	A0A1D2MUP0	Retinoblastoma-binding protein 5.	Hepatoma-derived growth factor.	0.427
Ocin01_01390	Ocin01_14525	A0A1D2NJW7	A0A1D2MGM5	Retinoblastoma-binding protein 5.	DnaJ subfamily B member 9.	0.744
Ocin01_02259	Ocin01_01389	A0A1D2NGQ9	A0A1D2NJ08	DnaJ protein 1.	Retinoblastoma-binding protein 5.	0.868
Ocin01_02259	Ocin01_01390	A0A1D2NGQ9	A0A1D2NJW7	DnaJ protein 1.	Retinoblastoma-binding protein 5.	0.868
Ocin01_02259	Ocin01_02366	A0A1D2NGQ9	A0A1D2NG96	DnaJ protein 1.	Histone-lysine N-methyltransferase trithorax.	0.973
Ocin01_02259	Ocin01_02987	A0A1D2NGQ9	A0A1D2NEN9	DnaJ protein 1.	Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily.	0.421