STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_02288Fanconi anemia group M protein. (588 aa)    
Predicted Functional Partners:
Ocin01_15885
Replication protein A 32 kDa subunit.
   
 0.999
Ocin01_15573
Fanconi anemia group A protein.
    
 0.999
Ocin01_13046
DNA excision repair protein ERCC-1.
   
 0.999
Ocin01_10574
E3 ubiquitin-protein ligase FANCL.
    
 0.999
Ocin01_10406
Putative nuclear transport factor 2.
    
 0.999
Ocin01_09990
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
   
 0.999
Ocin01_09868
Condensin complex subunit 1.
    
 0.999
Ocin01_09718
Spindle assembly abnormal protein 6.
   
 0.999
Ocin01_08201
Xylosyltransferase oxt.
   
 0.999
Ocin01_07808
Uncharacterized protein.
   
 0.999
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.