STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_01911Thrombospondin-3b. (612 aa)    
Predicted Functional Partners:
Ocin01_01772
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.688
Ocin01_05723
Eukaryotic translation initiation factor 3 subunit L.
    
 
 0.665
Ocin01_09964
AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.
    
 0.641
Ocin01_04645
Clathrin light chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin light chain family.
    
 0.635
Ocin01_07376
Ras-related protein Rab-5B.
     
 0.623
Ocin01_02324
AP-2 complex subunit mu; Belongs to the adaptor complexes medium subunit family.
    
 0.618
Ocin01_18480
WD repeat-containing protein 81.
     
 0.591
Ocin01_00340
Lysosomal-trafficking regulator.
     
 0.591
Ocin01_10734
Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.579
Ocin01_09160
AP-3 complex subunit delta; Belongs to the adaptor complexes large subunit family.
    
 0.562
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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