STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_01138Putative defense protein 3. (181 aa)    
Predicted Functional Partners:
Ocin01_14553
Putative 39S ribosomal protein L23, mitochondrial.
   
 
 0.648
Ocin01_04900
39S ribosomal protein L46, mitochondrial.
   
   0.645
Ocin01_11265
39S ribosomal protein L3, mitochondrial.
   
   0.633
Ocin01_05759
50S ribosomal protein L27.
   
 
 0.620
Ocin01_10204
39S ribosomal protein L19, mitochondrial.
   
 
 0.612
Ocin01_07212
39S ribosomal protein L16, mitochondrial.
   
   0.612
Ocin01_11803
28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.
   
   0.611
Ocin01_01072
39S ribosomal protein L17, mitochondrial.
   
   0.604
Ocin01_04160
39S ribosomal protein L4, mitochondrial.
   
 
 0.601
Ocin01_02326
39S ribosomal protein L47, mitochondrial.
   
 
 0.600
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.