STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_00452Protein SDE2. (283 aa)    
Predicted Functional Partners:
Ocin01_12399
Pre-mRNA-processing factor 17.
    
 0.983
Ocin01_07266
Pre-mRNA-splicing factor SLU7.
    
 0.977
Ocin01_11532
Pre-mRNA-splicing factor Syf2.
    
  0.966
Ocin01_02644
U2 small nuclear ribonucleoprotein A.
    
   0.946
Ocin01_00747
Tr-type G domain-containing protein.
    
   0.946
Ocin01_03366
Protein FAM32A.
    
 0.945
Ocin01_16491
PRKR-interacting protein 1.
    
 0.942
Ocin01_01284
Protein CWC15 A.
    
 
 0.934
Ocin01_03915
Uncharacterized protein.
    
   0.933
Ocin01_08609
Crooked neck-like protein 1.
    
 
 0.928
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.