STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ocin01_00249GTPase-activating protein and VPS9 domain-containing protein 1. (1462 aa)    
Predicted Functional Partners:
Ocin01_07376
Ras-related protein Rab-5B.
    
 0.976
Ocin01_04057
Rab GTPase-binding effector protein 1.
   
 0.969
Ocin01_06407
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.889
Ocin01_04762
Ras-related protein Rab-21.
   
 0.883
Ocin01_08006
Translation initiation factor eIF-2B subunit beta; Belongs to the eIF-2B alpha/beta/delta subunits family.
    
   0.847
Ocin01_07707
AN1-type zinc finger protein 4.
    
 0.806
Ocin01_13704
Regulator of G-protein signaling loco.
    
 0.793
Ocin01_13265
Disks large 5.
   
 0.789
Ocin01_06406
Unconventional myosin-XVIIIa.
    
 0.787
Ocin01_06404
Unconventional myosin-XVIIIa.
    
 0.787
Your Current Organism:
Orchesella cincta
NCBI taxonomy Id: 48709
Other names: O. cincta
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.