Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDR70146.1 | SDR70166.1 | SAMN05216421_0065 | SAMN05216421_0066 | Hypothetical protein. | Trehalose 6-phosphate phosphatase/trehalose 6-phosphate synthase/phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | 0.775 |
SDR70146.1 | SDS23854.1 | SAMN05216421_0065 | SAMN05216421_1157 | Hypothetical protein. | Exodeoxyribonuclease III. | 0.804 |
SDR70146.1 | SDS27870.1 | SAMN05216421_0065 | SAMN05216421_1231 | Hypothetical protein. | Exodeoxyribonuclease III. | 0.804 |
SDR70146.1 | SDT07833.1 | SAMN05216421_0065 | SAMN05216421_2845 | Hypothetical protein. | Exodeoxyribonuclease-3. | 0.804 |
SDR70146.1 | SDT22457.1 | SAMN05216421_0065 | SAMN05216421_3202 | Hypothetical protein. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.641 |
SDR70146.1 | mutM | SAMN05216421_0065 | SAMN05216421_2811 | Hypothetical protein. | DNA-(apurinic or apyrimidinic site) lyase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.813 |
SDR70146.1 | polA | SAMN05216421_0065 | SAMN05216421_3049 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.635 |
SDR70146.1 | rnfE | SAMN05216421_0065 | SAMN05216421_0825 | Hypothetical protein. | Electron transport complex protein RnfE; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. | 0.847 |
SDR70146.1 | rnfG | SAMN05216421_0065 | SAMN05216421_0826 | Hypothetical protein. | Electron transport complex protein RnfG; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the RnfG family. | 0.702 |
SDR70146.1 | ung | SAMN05216421_0065 | SAMN05216421_2239 | Hypothetical protein. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.641 |
SDR70166.1 | SDR70146.1 | SAMN05216421_0066 | SAMN05216421_0065 | Trehalose 6-phosphate phosphatase/trehalose 6-phosphate synthase/phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose. | Hypothetical protein. | 0.775 |
SDS23854.1 | SDR70146.1 | SAMN05216421_1157 | SAMN05216421_0065 | Exodeoxyribonuclease III. | Hypothetical protein. | 0.804 |
SDS23854.1 | SDS27870.1 | SAMN05216421_1157 | SAMN05216421_1231 | Exodeoxyribonuclease III. | Exodeoxyribonuclease III. | 0.699 |
SDS23854.1 | SDT07833.1 | SAMN05216421_1157 | SAMN05216421_2845 | Exodeoxyribonuclease III. | Exodeoxyribonuclease-3. | 0.736 |
SDS23854.1 | SDT22457.1 | SAMN05216421_1157 | SAMN05216421_3202 | Exodeoxyribonuclease III. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.842 |
SDS23854.1 | polA | SAMN05216421_1157 | SAMN05216421_3049 | Exodeoxyribonuclease III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.869 |
SDS23854.1 | ung | SAMN05216421_1157 | SAMN05216421_2239 | Exodeoxyribonuclease III. | Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. | 0.765 |
SDS27870.1 | SDR70146.1 | SAMN05216421_1231 | SAMN05216421_0065 | Exodeoxyribonuclease III. | Hypothetical protein. | 0.804 |
SDS27870.1 | SDS23854.1 | SAMN05216421_1231 | SAMN05216421_1157 | Exodeoxyribonuclease III. | Exodeoxyribonuclease III. | 0.699 |
SDS27870.1 | SDT07833.1 | SAMN05216421_1231 | SAMN05216421_2845 | Exodeoxyribonuclease III. | Exodeoxyribonuclease-3. | 0.724 |
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